Table 1.  The sequence of RGAP primers showing polymorphism in resistant (Flanders) and susceptible (Morocco) lines.

 

Primer

Direction

(5®3) Sequence

P1

F (forward)

GGIAAIACIACICTIGCI

P15

R (reverse)

IATGGAICCTTCIGCCATCCA

P1

F

GGIAAIACIACICTIGCI

P4N

R

IAGIGCIAGIGGIAGICC

P19

F

ICCTCCAAAICCAACAAT

P4N

R

IAGIGCIAGIGGIAGICC

P3N

F

GGIGGIGTIGTIGATGAT

P17

R

IAGIGCIAGGGIIAGICC

P5

F

CTTITIGTIGTIGTIGATGAT

P4N

R

IAGIGCIAGIGGIAGICC

P2

F

GTIITGGATGATIRITGG

P10

R

ATGICGCAAGTTGATIAG

P8

F

ATCCTGGTGACIACICGI

P10

R

ATGICGCAAGTTGATIAG

P2

F

GTIITGGATGTITITGG

P9

R

ICGIGTIGTCACCAGGAT

 

The primer pairs (P1,P15), (P19,P4N), (P1,P4N), (P3N, P17) were designed based on conserved amino acid and nucleotide sequences of LZ-NBS-LRR class of resistance genes including Yr10 (wheat), RPM1, RPS2, HTR (arabidopsis), Prf (tomato), RPS5 (bean), RX (potato) and Mla (barley) genes.  The primer pair (P5,P4N) was designed based on conserved sequences of TIR-NBS-LRR class of resistance genes including L6 and N (cotton) and RPP5 (arabidopsis) genes. The primer pairs (P2,P10), (P2,P9) and (P5,P10) were designed based on conserved sequences of NBS-LRR class of resistance genes including Cre3 (wheat), I2 (tomato) and Bs2 (pepper) genes; Primers P3N and P4N have been designed by Chen et al. (1998);   I: Inosine.