Table
1. The sequence of RGAP primers showing
polymorphism in resistant (Flanders) and susceptible (Morocco) lines.
Primer
|
Direction
|
(5′®3′) Sequence |
P1
|
F (forward)
|
GGIAAIACIACICTIGCI
|
P15
|
R (reverse)
|
IATGGAICCTTCIGCCATCCA
|
P1
|
F |
GGIAAIACIACICTIGCI
|
P4N
|
R
|
IAGIGCIAGIGGIAGICC
|
P19
|
F |
ICCTCCAAAICCAACAAT
|
P4N
|
R
|
IAGIGCIAGIGGIAGICC
|
P3N
|
F |
GGIGGIGTIGTIGATGAT
|
P17
|
R
|
IAGIGCIAGGGIIAGICC
|
P5
|
F |
CTTITIGTIGTIGTIGATGAT
|
P4N
|
R
|
IAGIGCIAGIGGIAGICC
|
P2
|
F |
GTIITGGATGATIRITGG
|
P10
|
R
|
ATGICGCAAGTTGATIAG
|
P8
|
F |
ATCCTGGTGACIACICGI
|
P10
|
R
|
ATGICGCAAGTTGATIAG
|
P2
|
F |
GTIITGGATGTITITGG
|
P9
|
R
|
ICGIGTIGTCACCAGGAT
|
The primer pairs (P1,P15), (P19,P4N), (P1,P4N), (P3N, P17) were designed
based on conserved amino acid and nucleotide sequences of LZ-NBS-LRR class of
resistance genes including Yr10 (wheat), RPM1,
RPS2, HTR (arabidopsis), Prf (tomato), RPS5
(bean), RX (potato) and Mla (barley) genes. The primer pair (P5,P4N) was designed based
on conserved sequences of TIR-NBS-LRR class of resistance genes including L6
and N (cotton) and RPP5 (arabidopsis) genes. The
primer pairs (P2,P10), (P2,P9) and (P5,P10) were designed based on conserved
sequences of NBS-LRR class of resistance genes including Cre3 (wheat),
I2 (tomato) and Bs2 (pepper) genes; Primers
P3N and P4N have been designed by Chen et al. (1998); I: Inosine.